Plantdeepsea github
WebMay 25, 2024 · Here, we present PlantDeepSEA as a deep learning-based web service to predict regulatory effects of genomic variants in multiple tissues of six plant species … WebMay 30, 2024 · 谢为博教授课题组基于所获得的深度学习模型，构建了PlantDeepSEA（http://plantdeepsea.ncpgr.cn）网络服务，免费供所有用户使用。 该网站主要包含2项功能：一是Variant Effector，其目的是预测序列变异对于各组织中染色质可及性的影响，用户可提交VCF文件进行变异效应预测；一是Sequence Profiler，该工具利用"in …
Plantdeepsea github
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WebWelcome! This is the documentation for PlantDeepSEA, a deep learning web service based on Selene Python SDK and Django. The web sever address is … WebMay 25, 2024 · Here, we present PlantDeepSEA as a deep learning-based web service to predict regulatory effects of genomic variants in multiple tissues of six plant species …
WebCase Studies — PlantDeepSEA documentation Case Studies Edit on GitHub Case Studies Case1: The DEP1 gene of rice A recent study ( Fu , Xu etal. ,2024) have shown that nine NCVs in the DEP1 promoter region can regulate the gene expression and leaf-trait variation . Mapping these nine variants to RiceVarMap database and constructing the VCF file . Web启动子启动子是RNA 聚合酶识别、结合和开始转录的一段DNA 序列，它含有RNA 聚合酶特异性结合和转录起始所需的保守序列，多数位于结构基因转录起始点的上游,启动子本身不被转录。但有一些启动子(如tRNA启动子)位于…
Web谢为博教授课题组基于所获得的深度学习模型，构建了PlantDeepSEA（ http://plantdeepsea.ncpgr.cn ）网络服务，免费供所有用户使用。 该网站主要包含2项功能：一是Variant Effector，其目的是预测序列变异对于各组织中染色质可及性的影响，用户可提交VCF文件进行变异效应预测；一是Sequence Profiler，该工具利用"in... WebPlantDeepSEA is a webserver based on deep learning models of chromatin accessibility for multiple plant species. It can predict the impact of genomic variants on chromatin accessibility in multiple tissues. Therefore, it can …
WebJun 28, 2024 · The first thing you want to ensure before you start this project, is that you have GitHub Actions setup. Head to your Profile and ensure the "Actions" tab is available. Everyone should now have this feature. Next, head to Platane's Action (available on the Marketplace) and make a copy of the code.
WebJul 1, 2024 · PlantDeepSEA is available at http://plantdeepsea.ncpgr.cn/. Go to: Graphical Abstract Graphical Abstract PlantDeepSEA integrates ATAC-seq data and genomic sequences based on a deep learning approach to predict the regulatory effects of genomic variants in multiple tissues of six plant species. get ready temptations chordsWebNov 18, 2024 · Plant dACRs are characterized by three distinct chromatin states In mammalian genomes, distal CREs are demarcated by H3K4 monomethylation (me1) 56, 57. Moreover, the depletion of cytosine DNA... christmas trees pre lit ledWebDeepSEA（基于深度学习的序列分析器）、DeepBind、Basset和 Basset 的继任者 Basenji是 DNN 的代表性框架。 相比之下，DeepSEA 的结构更简单，可以在短时间内训练和注释基因组片段和变异。 此外，基于 PyTorch 的深度学习库 Selene 可以轻松构建和训练 DNN 模型。 尽管大规模染色质分析数据已经可用，并且一些基于深度学习模型的工具已经在人类身上实 … get ready tactical systemWebMay 29, 2024 · Here, we present PlantDeepSEA as a deep learning-based web service to predict regulatory effects of genomic variants in multiple tissues of six plant species (including four crops).... get ready tempshttp://news.hzau.edu.cn/2024/0529/60475.shtml christmas trees pre lit slimWebGetting started with your GitHub account With a personal account on GitHub, you can import or create repositories, collaborate with others, and connect with the GitHub community. Getting started with GitHub Team With GitHub Team groups of people can collaborate across many projects at the same time in an organization account. christmas trees pre lightedWebFree GitHub Pro while you are a student. Developer tools About Visual Studio Code Microsoft's goal is to empower all students with the best resources and tools as they learn to code. Benefit These coding packs help you download everything you need to start coding in Java, Python, or .NET. Developer tools About GitHub Codespaces christmas tree sprays